Dear R users,
I am running R 2.10.0 on OS X 10.5.8.
I had been running 2.10 successfully for about a week (and have used
previous R versions for 2+ years on the same computer) until 2 days ago it
failed to start up for me. Now when I try to start R, the application tries
to initiate for several minutes then crashes. Looking at the activity
monitor, my memory usage goes from having about 1.6Gb free (out of 2Gb) to
<7Mb in the first 10-15 seconds of attempting to start the program. At this
point I either have to force quit R (as everything starts to freeze up) or
wait several minutes for it to crash.
I have erased the application and reinstalled it 4 times now - with exactly
the same result. I looked around in the Library and System folders to see if
any other files needed to be removed, but couldn't find any. I have also
restarted the computer and repaired permissions multiple times - and then
reinstalled R, with no luck. The exact same thing happens if I start R64.
I did not updated OS X or R, or install any other programs, just prior to
this first happening and am at a loss to explain what's going on. I have
copied the first part of one of the crash logs below. Does anyone have any
ideas for to remedy this?
best,
Steve
#---------------- Crash log ------------------------
Process: R [231]
Path: /Applications/R.app/Contents/MacOS/R
Identifier: org.R-project.R
Version: R 2.10.0 GUI 1.30 Leopard build 32-bit (5511)
Code Type: X86 (Native)
Parent Process: launchd [101]
Date/Time: 2009-11-18 23:15:45.570 -0500
OS Version: Mac OS X 10.5.8 (9L31a)
Report Version: 6
Anonymous UUID: D86CDCBC-00FD-4AEE-AB50-2EFE0DAE9E1E
Exception Type: EXC_BAD_ACCESS (SIGBUS)
Exception Codes: KERN_PROTECTION_FAILURE at 0x0000000000067ee2
Crashed Thread: 0
Thread 0 Crashed:
0 libSystem.B.dylib 0xffff07c7 __memcpy + 39
(cpu_capabilities.h:246)
1 com.apple.CoreFoundation 0x96a6a0b4 __CFStringEncodeByteStream +
4052
2 com.apple.Foundation 0x94446eb7
-[NSString(NSStringOtherEncodings)
getBytes:maxLength:usedLength:encoding:options:range:remainingRange:] + 295
3 com.apple.Foundation 0x94446a1a _NSNewStringByAppendingStrings
+ 538
4 com.apple.Foundation 0x94446760 -[NSString
stringByAppendingString:] + 192
5 org.R-project.R 0x00009ce8 -[RController doLoadHistory:]
+ 808
6 org.R-project.R 0x000076df -[RController awakeFromNib] +
2319
7 com.apple.CoreFoundation 0x96ac07f5 -[NSSet
makeObjectsPerformSelector:] + 181
8 com.apple.AppKit 0x92efed8e -[NSIBObjectData
nibInstantiateWithOwner:topLevelObjects:] + 1533
9 com.apple.AppKit 0x92ef4fba loadNib + 264
10 com.apple.AppKit 0x92ef491c +[NSBundle(NSNibLoading)
_loadNibFile:nameTable:withZone:ownerBundle:] + 946
11 com.apple.AppKit 0x92ef455f +[NSBundle(NSNibLoading)
loadNibFile:externalNameTable:withZone:] + 171
12 com.apple.AppKit 0x92ef449d +[NSBundle(NSNibLoading)
loadNibNamed:owner:] + 391
13 org.R-project.R 0x00002538 main + 296
14 org.R-project.R 0x000023d6 start + 54
Thread 1:
0 libSystem.B.dylib 0x9744946e __semwait_signal + 10
1 libSystem.B.dylib 0x97473dcd pthread_cond_wait$UNIX2003 +
73
2 com.apple.JavaScriptCore 0x947e0842
WTF::TCMalloc_PageHeap::scavengerThread() + 578
3 com.apple.JavaScriptCore 0x947e086f
WTF::TCMalloc_PageHeap::runScavengerThread(void*) + 15
4 libSystem.B.dylib 0x97473155 _pthread_start + 321
5 libSystem.B.dylib 0x97473012 thread_start + 34
Thread 2:
0 libSystem.B.dylib 0x97442286 mach_msg_trap + 10
1 libSystem.B.dylib 0x97449a7c mach_msg + 72
2 com.apple.CoreFoundation 0x96a37e7e CFRunLoopRunSpecific + 1790
3 com.apple.CoreFoundation 0x96a38aa8 CFRunLoopRunInMode + 88
4 com.apple.CFNetwork 0x94d48264 CFURLCacheWorkerThread(void*)
+ 388
5 libSystem.B.dylib 0x97473155 _pthread_start + 321
6 libSystem.B.dylib 0x97473012 thread_start + 34
Thread 3:
0 libSystem.B.dylib 0x97442286 mach_msg_trap + 10
1 libSystem.B.dylib 0x97449a7c mach_msg + 72
2 com.apple.CoreFoundation 0x96a37e7e CFRunLoopRunSpecific + 1790
3 com.apple.CoreFoundation 0x96a38aa8 CFRunLoopRunInMode + 88
4 com.apple.Foundation 0x9447ecad -[NSConnection
sendInvocation:internal:] + 3005
5 com.apple.Foundation 0x9447de29 -[NSDistantObject
forwardInvocation:] + 329
6 com.apple.CoreFoundation 0x96ab784a ___forwarding___ + 986
7 com.apple.CoreFoundation 0x96ab78b2 _CF_forwarding_prep_0 + 50
8 org.R-project.R 0x0000da65 -[RController readThread:] +
245
9 com.apple.Foundation 0x94447dfd -[NSThread main] + 45
10 com.apple.Foundation 0x944479a4 __NSThread__main__ + 308
11 libSystem.B.dylib 0x97473155 _pthread_start + 321
12 libSystem.B.dylib 0x97473012 thread_start + 34
Thread 0 crashed with X86 Thread State (32-bit):
eax: 0x3c706f74 ebx: 0x96a690fe ecx: 0x00000001 edx: 0x00000007
edi: 0x00067ee2 esi: 0xf1c0a03d ebp: 0xbfffe6f8 esp: 0xbfffe6f0
ss: 0x0000001f efl: 0x00010282 eip: 0xffff07c7 cs: 0x00000017
ds: 0x0000001f es: 0x0000001f fs: 0x00000000 gs: 0x00000037
cr2: 0x00067ee2
#----------------------------------------------------------------------
--
View this message in context: http://old.nabble.com/R-2.10-memory-leak-on-OS-X-tp26422294p26422294.html
Sent from the R help mailing list archive at Nabble.com.
______________________________________________
[hidden email] mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Mac OS X ¶ There are different ways to install PsychoPy on a Mac that will suit different users. Almost all Mac's come with a suitable video card by default. Intel Mac users (with OS X v10.7 or higher; 10.5 and 10.6 might still work) can simply download the standalone application bundle (the dmg file) and drag it to their Applications folder. This research addresses the problem of how to help lecturers in Professional courses feel comfortable creating learning opportunities in VWs. Research until now has tended to consist of an academic version of 'show and tell' and deep and interesting. IRelaunch Return to Work Boot Camp I - Assessing Career Options, dives into the hardest part of your relaunch - figuring out exactly what you want to do. This involves thoughtful analysis and is the most important step of the relaunch process. Since MS Project was designed and optimized specifically for the Windows operating system, MS Project does not work on Mac. The reason being is that MS Project and Mac cannot talk to each other and it wasn't designed for those computers.
This document is for developers only. We provide easy installers for end-users.
Open-source software is a collaborative effort. Please inform us if anything on this page is incorrect or out of date.
The main development guide is located here.
- 1Building TotalRecall from source
Building TotalRecall from source
Compiling TotalRecall for use on your own computer is designed to be very easy. The following instructions have been tested on recent versions of the operating systems described. To see which exact compilers and buildtool versions we used, see the build.xml file in the project.
Fair warning: these instructions are only for getting the program running on your computer, not for packaging things into nice standalone applications/installers. So they do involve moving our shared libraries into system paths (`/usr/lib`, `C:WindowsSystem32`, and `C:WindowsSysWow64`). Don't forget they're there if you edit the source code and want to try out your changes.
Ubuntu
- Install JDK 6
- Install Apache Ant
- Install Git (skip if you don't plan to build version straight out of repository)
- Install development headers for foreign architecture
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Compile/install the native libraries
- Compile the Java portion into a jar
- Run the program
Mac OS X
- Install XCode developer tools. These come on your OSX installation disc. You can also download them from Apple after registering.
- Install Git using this installer (skip if you don't plan to build version straight out of repository)
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Compile/install the native libraries
- Compile the Java portion into a jar
- Run the program
Windows
- Install JDK 6. Add the Java bin folder to your Path so it can be used from the command line. For example you might add `C:Program FilesJavajdk1.6.0_20bin` to the Path value.
- Install Git using the msysgit installer (skip if you don't plan to build version straight out of repository). During the installation be sure to select Run Git from the Windows Command Prompt.
- Install Apache Ant. On Windows XP drag the unzipped folder to `C:Program Files`. On Windows Vista7 64-bit drag to `C:Program Files (x86)`. Now add the Ant bin folder to your Path variable so it can be used from the command line. For example, you might add `C:Program Files (x86)apache-ant-1.8.0bin`.
- Try running the command `ant` from the command line. It should succeed if you set your Path correctly. If you get a warning about being unable to find tools.jar you will have to create a system variable called `JAVA_HOME` which points to your JDK root directory. For example the value might be `C:Program FilesJavajdk1.6.0_20`.
- Install Microsoft Visual Studio 2008. Add the vcpackages folder to your Path so it can be used from the command line. For example, you might add `C:Program FilesMicrosoft Visual Studio 9.0VCvcpackages`.
- Open the Windows command prompt as an administrator. This is the default behavior on Windows XP administrator accounts, but not Vista/7.
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Install development headers for foreign architecture
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Compile/install the native libraries
- Compile the Java portion into a jar
- Run the program
Mac OS X
- Install XCode developer tools. These come on your OSX installation disc. You can also download them from Apple after registering.
- Install Git using this installer (skip if you don't plan to build version straight out of repository)
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Compile/install the native libraries
- Compile the Java portion into a jar
- Run the program
Windows
- Install JDK 6. Add the Java bin folder to your Path so it can be used from the command line. For example you might add `C:Program FilesJavajdk1.6.0_20bin` to the Path value.
- Install Git using the msysgit installer (skip if you don't plan to build version straight out of repository). During the installation be sure to select Run Git from the Windows Command Prompt.
- Install Apache Ant. On Windows XP drag the unzipped folder to `C:Program Files`. On Windows Vista7 64-bit drag to `C:Program Files (x86)`. Now add the Ant bin folder to your Path variable so it can be used from the command line. For example, you might add `C:Program Files (x86)apache-ant-1.8.0bin`.
- Try running the command `ant` from the command line. It should succeed if you set your Path correctly. If you get a warning about being unable to find tools.jar you will have to create a system variable called `JAVA_HOME` which points to your JDK root directory. For example the value might be `C:Program FilesJavajdk1.6.0_20`.
- Install Microsoft Visual Studio 2008. Add the vcpackages folder to your Path so it can be used from the command line. For example, you might add `C:Program FilesMicrosoft Visual Studio 9.0VCvcpackages`.
- Open the Windows command prompt as an administrator. This is the default behavior on Windows XP administrator accounts, but not Vista/7.
- Download a nightly version of the project source from the program homepage or get it straight out of the repository
- Compile/install the native libraries
- Compile the Java portion into a jar
- Run the program
Psychproject Mac Os X
Psychproject Mac Os Download
The full build chain
Our build.xml does some fancy stuff like creating native executables and installers for the supported platforms. Read the documentation in build.xml to find out how. This native integration allows us (with the help of a few tricks) to avoid complex installers that tamper with users' shared libraries.
Psychproject Mac Os Catalina
Retrieved from 'https://memory.psych.upenn.edu/mediawiki/index.php?title=TotalRecall/Build&oldid=5163'
